PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3UJT

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	100.0	H1	13	H1-13-1	12	KASGYTFTSSWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	100.0	H2	10	H2-10-1	8	EIHPNSGNTN	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	50.0	H3	6	H3-6-1	7	VRGFAY	BBEAAB
H	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	100.0	H4	8	H4-8-1	6	VDTSSSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	100.0	H1	13	H1-13-1	11	KASGYTFTSSWMH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	100.0	H2	10	H2-10-1	7	EIHPNSGNTN	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	50.0	H3	6	H3-6-1	9	VRGFAY	BBEAAB
I	heavy	Mus.musculus	Mo_IGHV1S130*01	98.6	Mo_IGHV1S130*01	100.0	H4	8	H4-8-1	6	VDTSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L1	17	L1-17-1	7	KSSQSLlnssnqKNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L2	8	L2-8-1	7	YFASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-1	18	QQHYSTPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L1	17	L1-17-1	12	KSSQSLlnssnqKNYLA	BBABBABBAAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L2	8	L2-8-1	8	YFASTRES	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-1	19	QQHYSTPFT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022