PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3UAJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	84.6	H1	13	H1-13-1	18	TVSGGSISDFYWS	BBBLEBAAABBBB
C	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	22.2	H2	9	H2-9-*	-1	YAHSRVSAY	BBBAABBBB
C	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	100.0	H3	17	H3-17-*	-1	ARQGTGTtgvSEDSFDL
C	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	87.5	H4	8	H4-8-1	14	VDTSKNQI	BBAAALBB
D	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	63.6	L1	11	L1-11-1	10	RASQDISIRLN	BBABBAEABBB
D	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	87.5	L2	8	L2-8-1	12	YDASTLES	BLLABBBB
D	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	100.0	L3	9	L3-9-cis7-1	10	QQFNSYPLT	BBAABBbBB
D	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
H	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	84.6	H1	13	H1-13-1	18	TVSGGSISDFYWS	BBBLEBAAABBBB
H	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	22.2	H2	9	H2-9-*	-1	YAHSRVSAY	BBBAABBBB
H	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	100.0	H3	17	H3-17-*	-1	ARQGTGTtgvSEDSFDL
H	heavy	Pan.troglodytes	Hu_IGHV4-59*11	89.0	Hu_IGHV4-59*11	87.5	H4	8	H4-8-1	14	VDTSKNQI	BBAAALBB
L	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	63.6	L1	11	L1-11-1	11	RASQDISIRLN	BBABBAEABBB
L	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	87.5	L2	8	L2-8-1	12	YDASTLES	BLLABBBB
L	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	100.0	L3	9	L3-9-cis7-1	10	QQFNSYPLT	BBAABBbBB
L	kappa	Pan.troglodytes	Hu_IGKV1-13*02	97.1	Hu_IGKV1-13*02	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022