PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3U9P

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	100.0	H1	13	H1-13-1	15	TVSGFSLTSNSVH	BBBLBBAAABBBB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	55.6	H2	9	H2-9-1	14	GIWGDGRTD	EBBAALBBB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	100.0	H3	13	H3-13-*	-1	TRCRRDSSYVVDA	BBBBAAALLBBAB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	100.0	H4	8	H4-8-1	14	RDTSKSQV	BBAAALBB
K	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	100.0	H1	13	H1-13-1	13	TVSGFSLTSNSVH	BBBLBBAAABBBB
K	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	55.6	H2	9	H2-9-1	16	GIWGDGRTD	BBBAALBBB
K	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	100.0	H3	13	H3-13-*	-1	TRCRRDSSYVVDA	BBBBAAALLBBAB
K	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	91.8	Ra_IGHV2-1*01	100.0	H4	8	H4-8-1	10	RDTSKSQV	BBAAALBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	72.7	L1	11	L1-11-2	8	QASQIIYNYIA	BBABBALLBBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	75.0	L2	8	L2-8-*	-1	RYTSTLES	BLEABBBA
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	100.0	L3	9	L3-9-cis7-1	10	LQYDNLPYM	BBAABBbBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	100.0	L4	6	L4-6-1	12	GSGRDY	EBEABB
M	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	72.7	L1	11	L1-11-2	9	QASQIIYNYIA	BBABBALLBBB
M	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	75.0	L2	8	L2-8-1	8	RYTSTLES	BLEABBBB
M	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	100.0	L3	9	L3-9-cis7-1	10	LQYDNLPYM	BBAABBbBB
M	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	95.7	Ra_IGKV19S2*01	100.0	L4	6	L4-6-1	10	GSGRDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022