PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3U6R

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	53.8	H1	13	H1-13-*	-1	QVFGDTFSRYTIQ	BBBBABBBAAABB
A	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	50.0	H2	10	H2-10-3	25	NIIPVYNTPN	BBBBEALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	100.0	H3	19	H3-19-*	-1	ARVVipnaiRHTMGYYFDY
A	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	87.5	H4	8	H4-8-1	8	ADDSTSTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	81.8	L1	11	L1-11-1	9	RASQSVNKYLA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	6	YDASNRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	71.4	L3	8	L3-8-1	11	QQRSDWVT	BBAABEBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	53.8	H1	13	H1-13-*	-1	QVFGDTFSRYTIQ	BBBEEBBBAAABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	50.0	H2	10	H2-10-3	25	NIIPVYNTPN	BBBBEALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	100.0	H3	19	H3-19-*	-1	ARVVipnaiRHTMGYYFDY
H	heavy	Homo.sapiens	Hu_IGHV1-69*08	90.0	Hu_IGHV1-69*08	87.5	H4	8	H4-8-1	8	ADDSTSTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	81.8	L1	11	L1-11-1	7	RASQSVNKYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	6	YDASNRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	71.4	L3	8	L3-8-1	13	QQRSDWVT	BBAABEBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022