PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3U30

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	90.9	L1	11	L1-11-1	6	RASQDVSTAVA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	50.0	L2	8	L2-8-1	8	YSAKFLYS	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	42.9	L3	9	L3-9-cis7-1	8	QQSYTTPPT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-4*01	84.6	H1	13	H1-13-4	18	AASGFTFSNTYIS	BBBLBBABLBBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-4*01	30.0	H2	10	H2-10-1	15	SITPSSGQTD	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARTWLLRWVMDL	BBBAABBLBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	10	ADTSKNTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	90.9	L1	11	L1-11-1	5	RASQDVSTAVA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	50.0	L2	8	L2-8-1	8	YSAKFLYS	BLEABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	42.9	L3	9	L3-9-cis7-1	10	QQSYTTPPT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-4*01	84.6	H1	13	H1-13-4	22	AASGFTFSNTYIS	BBBLBBABLBBBB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-4*01	30.0	H2	10	H2-10-1	18	SITPSSGQTD	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARTWLLRWVMDL	BBBAABBLBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022