PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3U2S

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	76.9	H1	13	H1-13-1	7	AASGFDFSRQGMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	70.0	H2	10	H2-10-2	8	FIKYDGSEKY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	50.0	H3	30	H3-30-*	-1	VREaggpdyrngynyydfyDGYYNYHYMDV
A	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	87.5	H4	8	H4-8-1	5	RDNSKDTL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	71.4	L1	14	L1-14-2	7	QGTSNDVGgYESVS	BBBAAAAAABBABB
B	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	75.0	L2	8	L2-8-1	8	YDVSKRPS	BLEABBBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	33.3	L3	10	L3-10-1	15	KSLTSTRRRV	BBBBAALBBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	9	KSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	76.9	H1	13	H1-13-1	7	AASGFDFSRQGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	70.0	H2	10	H2-10-2	9	FIKYDGSEKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	50.0	H3	30	H3-30-*	-1	VREaggpdyrngynyydfyDGYYNYHYMDV
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	84.5	Hu_IGHV3-33*01	87.5	H4	8	H4-8-1	7	RDNSKDTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	71.4	L1	14	L1-14-2	8	QGTSNDVGgYESVS	BBBAAAAAABBABB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	75.0	L2	8	L2-8-1	8	YDVSKRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	33.3	L3	10	L3-10-1	16	KSLTSTRRRV	BBBBAALBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	95.6	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	7	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022