PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3U0T

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	75.0	L1	16	L1-16-*	-1	KSSQSLlysdaKTYLN	BBABBABBABABBBBB
A	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	37.5	L2	8	L2-8-1	6	YQISRLDP	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	71.4	L3	9	L3-9-cis7-1	14	LQGTHYPVL	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	61.5	H1	13	H1-13-*	-1	KASGYYTEAYYIH	BBBEBLAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	40.0	H2	10	H2-10-1	9	RIDPATGNTK	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	50.0	H3	9	H3-9-*	-1	ASLYSLPVY	BBAABBbBB
B	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	100.0	H4	8	H4-8-1	7	RDTSTSTV	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	75.0	L1	16	L1-16-*	-1	KSSQSLlysdaKTYLN	BBABBABBABABBBBB
C	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	37.5	L2	8	L2-8-1	9	YQISRLDP	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	71.4	L3	9	L3-9-cis7-1	15	LQGTHYPVL	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV2D-30*01	100.0	Hu_IGKV2D-30*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	61.5	H1	13	H1-13-*	-1	KASGYYTEAYYIH	BBBEBLAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	40.0	H2	10	H2-10-1	7	RIDPATGNTK	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	50.0	H3	9	H3-9-*	-1	ASLYSLPVY	BBAABBbBB
D	heavy	Homo.sapiens	Hu_IGHV1-46*04	95.9	Hu_IGHV1-46*04	100.0	H4	8	H4-8-1	8	RDTSTSTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022