PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3TNN

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	8	AASGFTFSTYAMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-2	10	SINNSGRNTF	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H3	12	H3-12-*	-1	AKDLRLGGGSDY	BBBABBLBBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	92.9	L1	14	L1-14-2	10	TGTSSDVGSyNFVS	BBBAAAAAABABBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	75.0	L2	8	L2-8-1	9	YEVSERPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	55.6	L3	11	L3-11-*	-1	SSYAGSTTFRV	BBBAEAAAEBB
B	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	100.0	L4	6	L4-6-2	11	KSGNTA	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	9	AASGFTFSTYAMS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-2	7	SINNSGRNTF	BBBAALABBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H3	12	H3-12-*	-1	AKDLRLGGGSDY	BBBABBLBBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	92.9	L1	14	L1-14-2	14	TGTSSDVGSyNFVS	BBBAAAAAABBABB
D	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	75.0	L2	8	L2-8-1	10	YEVSERPS	BLLABBBB
D	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	55.6	L3	11	L3-11-*	-1	SSYAGSTTFRV	BBBAEAAAEBB
D	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	100.0	L4	6	L4-6-2	9	KSGNTA	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	9	AASGFTFSTYAMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-2	8	SINNSGRNTF	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H3	12	H3-12-*	-1	AKDLRLGGGSDY	BBBABBLBBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
F	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	92.9	L1	14	L1-14-2	7	TGTSSDVGSyNFVS	BBBAAAAAABBBBB
F	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	75.0	L2	8	L2-8-1	9	YEVSERPS	BLLABBBB
F	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	55.6	L3	11	L3-11-*	-1	SSYAGSTTFRV	BBBAEAAAEBB
F	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	100.0	L4	6	L4-6-2	11	KSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	9	AASGFTFSTYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-2	8	SINNSGRNTF	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H3	12	H3-12-*	-1	AKDLRLGGGSDY	BBBABBLBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	92.9	L1	14	L1-14-2	8	TGTSSDVGSyNFVS	BBBAAAAAABBBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	75.0	L2	8	L2-8-1	8	YEVSERPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	55.6	L3	11	L3-11-*	-1	SSYAGSTTFRV	BBBAEAAAEBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	100.0	L4	6	L4-6-2	9	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022