PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3SKJ

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSHYMMA	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H2	10	H2-10-2	24	RIGPSGGPTH	BBBAALBBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	21	H3-21-*	-1	AGYDSGYDYvavagpaEYFQH
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	12	AASGFTFSHYMMA	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H2	10	H2-10-*	-1	RIGPSGGPTH	BBBAALEBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	21	H3-21-*	-1	AGYDSGYDYvavagpaEYFQH
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	10	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	90.9	L1	11	L1-11-1	9	RASQSISTWLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	24	YKASNLHT	BLLLBBBB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L3	9	L3-9-*	-1	QQYNSYSRT	BBAABAALB
L	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	90.9	L1	11	L1-11-1	7	RASQSISTWLA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	62.5	L2	8	L2-8-1	13	YKASNLHT	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L3	9	L3-9-*	-1	QQYNSYSRT	BBAABAALB
M	kappa	Homo.sapiens	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L4	6	L4-6-1	7	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022