PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3SGD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	92.3	H1	13	H1-13-1	8	AASGFSFNTNAMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	83.3	H2	12	H2-12-1	6	RIRSKinNYSTY	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	100.0	H3	6	H3-6-1	13	VRGTTY	BBEAAB
H	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	100.0	H4	8	H4-8-1	7	RDDSQSML	BBAAALBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	7	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	5	YLVSKLDS	BLLABBBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	85.7	L3	9	L3-9-cis7-1	18	WQGSHFPYT	BBAABBbBB
I	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
J	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	92.3	H1	13	H1-13-1	10	AASGFSFNTNAMN	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	83.3	H2	12	H2-12-1	8	RIRSKinNYSTY	BBBBAAALLBBB
J	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	100.0	H3	6	H3-6-1	14	VRGTTY	BBEAAB
J	heavy	Mus.musculus	Mo_IGHV10S4*01	95.9	Mo_IGHV10S4*01	100.0	H4	8	H4-8-1	4	RDDSQSML	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	8	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	4	YLVSKLDS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	85.7	L3	9	L3-9-cis7-1	15	WQGSHFPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-135*01	100.0	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022