PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3RKD

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	90.9	L1	11	L1-11-2	5	RASEIIYSNLA	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	75.0	L2	8	L2-8-1	4	YSATNLAE	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	85.7	L3	9	L3-9-cis7-2	14	QHFWGNPWT	BBABEBbBB
C	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	8	GSGTQY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	93.3	H1	15	H1-15-1	9	SFSGFSLSTSGMgvG	BBBLBBAABBLBBBB
D	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	77.8	H2	9	H2-9-1	11	HIWWDDVKR	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	100.0	H3	16	H3-16-*	-1	ARIKSviTTGDYALDY
D	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	62.5	H4	8	H4-8-1	11	KDTSSSQL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	93.3	H1	15	H1-15-1	9	SFSGFSLSTSGMgvG	BBBLBBAABBLBBBB
H	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	77.8	H2	9	H2-9-1	11	HIWWDDVKR	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	100.0	H3	16	H3-16-*	-1	ARIKSviTTGDYALDY
H	heavy	Mus.musculus	Mo_IGHV8-8*01	93.2	Mo_IGHV8-8*01	62.5	H4	8	H4-8-*	-1	KDTSSSQL	BBAABBBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	90.9	L1	11	L1-11-2	6	RASEIIYSNLA	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	75.0	L2	8	L2-8-1	4	YSATNLAE	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	85.7	L3	9	L3-9-cis7-2	15	QHFWGNPWT	BBABEBbBB
L	kappa	Mus.musculus	Mo_IGKV12-46*01	100.0	Mo_IGKV12-46*01	100.0	L4	6	L4-6-1	6	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022