PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3RA7

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	84.6	H1	13	H1-13-1	11	AVSGFTFSDYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-4	15	SINIGATYAY	BBBBLLABBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	100.0	H3	18	H3-18-*	-1	ARPgspyEYDKAYYSMAY
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	8	RDNAKNTL	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	84.6	H1	13	H1-13-1	9	AVSGFTFSDYAMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	40.0	H2	10	H2-10-2	13	SINIGATYAY	BBBAALABBB
I	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	100.0	H3	18	H3-18-*	-1	ARPgspyEYDKAYYSMAY
I	heavy	Mus.musculus	Mo_IGHV5-9-3*01	94.5	Mo_IGHV5-9-3*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	90.9	L1	11	L1-11-1	9	RASQDIKNYLN	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	62.5	L2	8	L2-8-4	11	YYSSTLLS	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	42.9	L3	9	L3-9-cis7-1	12	QQSITLPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	83.3	L4	6	L4-6-1	13	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	90.9	L1	11	L1-11-1	10	RASQDIKNYLN	BBABBAEABBB
M	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	62.5	L2	8	L2-8-4	14	YYSSTLLS	BEAABBBB
M	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	42.9	L3	9	L3-9-cis7-1	8	QQSITLPPT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV10-94*05	88.4	Mo_IGKV10-94*05	83.3	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022