PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3QPX

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens.Rattus.norvegicus	Ra_IGHV5-35*01	94.5	Ra_IGHV5-35*01	84.6	H1	13	H1-13-1	18	AASGLTFSANWLN	BBBLBBAAABBBB
H	heavy	Homo.sapiens.Rattus.norvegicus	Ra_IGHV5-35*01	94.5	Ra_IGHV5-35*01	70.0	H2	10	H2-10-2	8	SISPDGGSTS	BBBAALABBB
H	heavy	Homo.sapiens.Rattus.norvegicus	Ra_IGHV5-35*01	94.5	Ra_IGHV5-35*01	100.0	H3	12	H3-12-*	-1	ARRATRVSPFDY	BBBABAABBBAB
H	heavy	Homo.sapiens.Rattus.norvegicus	Ra_IGHV5-35*01	94.5	Ra_IGHV5-35*01	75.0	H4	8	H4-8-1	8	KDNAKKTG	BBAAALBB
L	kappa	Homo.sapiens.Rattus.norvegicus	Ra_IGKV22S9*01	95.7	Ra_IGKV22S9*01	72.7	L1	11	L1-11-2	5	KASQNIYNYLN	BBABBALLBBB
L	kappa	Homo.sapiens.Rattus.norvegicus	Ra_IGKV22S9*01	95.7	Ra_IGKV22S9*01	62.5	L2	8	L2-8-1	7	YYTDRLQT	BLEABBBB
L	kappa	Homo.sapiens.Rattus.norvegicus	Ra_IGKV22S9*01	95.7	Ra_IGKV22S9*01	57.1	L3	8	L3-8-3	10	QQYNSRDT	BBAABBBB
L	kappa	Homo.sapiens.Rattus.norvegicus	Ra_IGKV22S9*01	95.7	Ra_IGKV22S9*01	83.3	L4	6	L4-6-1	9	GSGSDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022