PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3QNY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	62.5	L1	16	L1-16-1	17	RSSQSLlrrdgHNDLE	BBABBABBAALBBBBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	87.5	L2	8	L2-8-1	7	YLGSTRAS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	71.4	L3	9	L3-9-cis7-1	8	MQNKQTPLT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	76.9	H1	13	H1-13-1	17	AASGFTLSGSNVH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	58.3	H2	12	H2-12-1	19	RIKRNaeSDATA	BBBBAAALLBBB
B	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	0.0	H3	10	H3-10-*	-1	VIrgdvynRQ
B	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	100.0	H4	8	H4-8-1	7	RDDSKNTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	62.5	L1	16	L1-16-1	15	RSSQSLlrrdgHNDLE	BBABBABBAALBBBBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	87.5	L2	8	L2-8-1	10	YLGSTRAS	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	71.4	L3	9	L3-9-cis7-1	8	MQNKQTPLT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV2-28*01	92.8	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	76.9	H1	13	H1-13-1	19	AASGFTLSGSNVH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	58.3	H2	12	H2-12-1	17	RIKRNaeSDATA	BBBBAAALLBBB
D	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	0.0	H3	10	H3-10-*	-1	VIrgdvynRQ
D	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	100.0	H4	8	H4-8-1	8	RDDSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022