PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3Q6F

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	10	GGNNIANKNVH	BBBLAAABBBB
A	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-1	20	YYDDDRPS	BLEABBBB
A	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	12	QVWDSNSDHVV	BBBBAAALBBB
A	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	21	NSGNTA	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	12	TASGFSFDDSTMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-2	18	LISWNGGRTY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
B	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	11	RDNSKNSL	BBAAALBB
C	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	9	GGNNIANKNVH	BBBLAAABBBB
C	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-1	20	YYDDDRPS	BLEABBBB
C	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	12	QVWDSNSDHVV	BBBBAAALBBB
C	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	21	NSGNTA	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	12	TASGFSFDDSTMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-2	18	LISWNGGRTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
D	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	12	RDNSKNSL	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	10	GGNNIANKNVH	BBBLAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-1	19	YYDDDRPS	BLEABBBB
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	12	QVWDSNSDHVV	BBBBAAALBBB
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	20	NSGNTA	BBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	12	TASGFSFDDSTMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-2	18	LISWNGGRTY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
F	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	12	RDNSKNSL	BBAAALBB
G	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	10	GGNNIANKNVH	BBBLAAABBBB
G	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-1	19	YYDDDRPS	BLEABBBB
G	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	12	QVWDSNSDHVV	BBBBAAALBBB
G	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	20	NSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	12	TASGFSFDDSTMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-2	19	LISWNGGRTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
H	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	11	RDNSKNSL	BBAAALBB
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	9	GGNNIANKNVH	BBBLAAABBBB
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-1	18	YYDDDRPS	BLEABBBB
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	11	QVWDSNSDHVV	BBBBAAALBBB
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	20	NSGNTA	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	12	TASGFSFDDSTMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-2	19	LISWNGGRTY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
J	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	11	RDNSKNSL	BBAAALBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	72.7	L1	11	L1-11-3	10	GGNNIANKNVH	BBBLAAABBBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	87.5	L2	8	L2-8-1	19	YYDDDRPS	BLEABBBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	88.9	L3	11	L3-11-1	12	QVWDSNSDHVV	BBBBAAALBBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	98.5	Hu_IGLV3-21*01	100.0	L4	6	L4-6-2	20	NSGNTA	BBEABB
L	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	76.9	H1	13	H1-13-1	12	TASGFSFDDSTMH	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	80.0	H2	10	H2-10-2	19	LISWNGGRTY	BBBAALABBB
L	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H3	23	H3-23-*	-1	AKDKGdsdydynlgYSYFYYMDG
L	heavy	Homo.sapiens	Hu_IGHV3-43*01	93.2	Hu_IGHV3-43*01	100.0	H4	8	H4-8-1	12	RDNSKNSL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022