PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3NN8

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H1	15	H1-15-1	18	KASGYSLSTSGMgvN	BBBLBBAABBLBBBB
A	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H2	9	H2-9-1	18	HIYWDDDKR	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	100.0	H3	14	H3-14-*	-1	ARRGGSSHYYAMDY	BBBBBAAALLBBAB
A	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	62.5	H4	8	H4-8-1	12	VDKTSSTV	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBABBABBlaABBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	14	YKVSNRFS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	85.7	L3	9	L3-9-cis7-1	11	FQGSLVPPT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L4	6	L4-6-2	27	GSGTDF	BBEABB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H1	15	H1-15-1	16	KASGYSLSTSGMgvN	BBBLBBAABBLBBBB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H2	9	H2-9-1	19	HIYWDDDKR	BBBAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	100.0	H3	14	H3-14-*	-1	ARRGGSSHYYAMDY	BBALBEAALLBBAB
C	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	62.5	H4	8	H4-8-1	11	VDKTSSTV	BBAAALBB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H1	15	H1-15-1	19	KASGYSLSTSGMgvN	BBBLBBAABBLBBBB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	HIYWDDDKR	BBBABABBB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	100.0	H3	14	H3-14-*	-1	ARRGGSSHYYAMDY	BBBAEAAALLBBAB
D	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	62.5	H4	8	H4-8-1	13	VDKTSSTV	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBABALBBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	14	YKVSNRFS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	85.7	L3	9	L3-9-cis7-1	17	FQGSLVPPT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB
F	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBABALBAEeABBBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	9	YKVSNRFS	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	85.7	L3	9	L3-9-cis7-1	18	FQGSLVPPT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L4	6	L4-6-*	-1	GSGTDF	aBAABB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H1	15	H1-15-1	18	KASGYSLSTSGMgvN	BBBLBBAABBLBBBB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	CDRLenMismatch	-1.0	H2	9	H2-9-*	-1	HIYWDDDKR	BBBABABBB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	100.0	H3	14	H3-14-*	-1	ARRGGSSHYYAMDY	BBBAEABLLLBBAB
G	heavy	Mus.musculus	Mo_IGHV1-82*01	76.7	Mo_IGHV1-82*01	62.5	H4	8	H4-8-1	15	VDKTSSTV	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBABALBBAALBBBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	87.5	L2	8	L2-8-1	17	YKVSNRFS	BLEABBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	85.7	L3	9	L3-9-cis7-1	18	FQGSLVPPT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV1-117*02	95.7	Mo_IGKV1-117*02	100.0	L4	6	L4-6-*	-1	GSGTDF	EBBLBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022