PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3NH7

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	76.9	H1	13	H1-13-1	11	AASGFTFSNYTLN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	60.0	H2	10	H2-10-2	10	YTSSSGSLTG	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	100.0	H3	13	H3-13-*	-1	ARERWHVRGYFDH	BBBBBAABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	75.0	H4	8	H4-8-*	-1	RDNSKNTL	BBAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	76.9	H1	13	H1-13-1	9	AASGFTFSNYTLN	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	60.0	H2	10	H2-10-2	11	YTSSSGSLTG	BBBAALABBB
I	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	100.0	H3	13	H3-13-*	-1	ARERWHVRGYFDH	BBBBBAABBBBAB
I	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	75.0	H4	8	H4-8-*	-1	RDNSKNTL	BBAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	76.9	H1	13	H1-13-1	9	AASGFTFSNYTLN	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	60.0	H2	10	H2-10-2	10	YTSSSGSLTG	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	100.0	H3	13	H3-13-*	-1	ARERWHVRGYFDH	BBBBBAABBBBAB
J	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	75.0	H4	8	H4-8-*	-1	RDNSKNTL	BBAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	76.9	H1	13	H1-13-1	9	AASGFTFSNYTLN	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	60.0	H2	10	H2-10-2	11	YTSSSGSLTG	BBBAALABBB
K	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	100.0	H3	13	H3-13-*	-1	ARERWHVRGYFDH	BBBBBAABBBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-48*03	95.9	Hu_IGHV3-48*03	75.0	H4	8	H4-8-*	-1	RDNSKNTL	BBAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	11	SGDSLGSKYVI	BBBLAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	75.0	L2	8	L2-8-*	-1	YDDSNRPS	ABAABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	12.5	L3	11	L3-11-*	-1	STFTMSGNGTV	BBBBABbLBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB
M	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	11	SGDSLGSKYVI	BBBLAAABBBB
M	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	75.0	L2	8	L2-8-*	-1	YDDSNRPS	ABAABBBB
M	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	12.5	L3	11	L3-11-*	-1	STFTMSGNGTV	BBBBABLLBBB
M	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	15	NSGNTA	BBEABB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	12	SGDSLGSKYVI	BBBLAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	75.0	L2	8	L2-8-*	-1	YDDSNRPS	ABAABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	12.5	L3	11	L3-11-*	-1	STFTMSGNGTV	BBBBABLLBBB
N	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	17	NSGNTA	BBEABB
O	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	12	SGDSLGSKYVI	BBBLAAABBBB
O	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	75.0	L2	8	L2-8-*	-1	YDDSNRPS	ABAABBBB
O	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	12.5	L3	11	L3-11-*	-1	STFTMSGNGTV	BBBBABLLBBB
O	lambda	Homo.sapiens	Hu_IGLV3-1*01	92.4	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022