PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3NCY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
P	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	92.3	H1	13	H1-13-1	14	KASGYTFTNYDIN	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	90.0	H2	10	H2-10-*	-1	WIYPGDGSTM	BBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	0.0	H3	13	H3-13-*	-1	ARLDGNYGGWFAY	BBBAElbEaBBAB
P	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BAAALBBB
Q	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	92.3	H1	13	H1-13-1	14	KASGYTFTNYDIN	BBBLBBAAABBBB
Q	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	90.0	H2	10	H2-10-*	-1	WIYPGDGSTM	BBBAAABBBB
Q	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	0.0	H3	13	H3-13-*	-1	ARLDGNYGGWFAY	BBBAElbEaBBAB
Q	heavy	Mus.musculus	Mo_IGHV1S33*01	98.5	Mo_IGHV1S33*01	100.0	H4	8	H4-8-*	-1	ADKSSSTA	BAAALBBB
S	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	90.0	L1	10	L1-10-*	-1	SASSSVNYMH	BBABBBBEBB
S	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L2	8	L2-8-*	-1	YDTSKLAS	BLLABBBA
S	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L3	9	L3-9-cis7-1	20	QQWSYNPPT	BBAABBbBB
S	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	8	GSGTSY	EBEABB
W	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	90.0	L1	10	L1-10-*	-1	SASSSVNYMH	BBABBBBEBB
W	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L2	8	L2-8-*	-1	YDTSKLAS	BLLABBBA
W	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L3	9	L3-9-cis7-1	20	QQWSYNPPT	BBAABBbBB
W	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022