PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3MJ8

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	CDRLenMismatch	-1.0	L1	11	L1-11-3	15	SGDKLSDVYVH	BBBLAAABBBB
A	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	Ra_IGKV8S6*01	37.5	L2	8	L2-8-1	18	YEDNRRPS	BLEBBBBB
A	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	Ra_IGKV8S6*01	14.3	L3	11	L3-11-*	-1	QSWDGTNSAWV	BBBBAABBBBB
A	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	Ra_IGKV8S6*01	33.3	L4	6	L4-6-2	18	NSGNMA	BBEABB
B	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	76.9	H1	13	H1-13-1	18	TVSGISLSDYGVH	BBBLBBAAABBBB
B	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	44.4	H2	9	H2-9-1	11	IIGHAGGTD	BBBAALBBB
B	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	50.0	H3	10	H3-10-2	14	ARHFYTYFDV	BBBBEABBAB
B	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	100.0	H4	8	H4-8-1	10	RDTSKSQV	BBAAALBB
H	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	76.9	H1	13	H1-13-1	22	TVSGISLSDYGVH	BBBLBBAAABBBB
H	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	44.4	H2	9	H2-9-1	11	IIGHAGGTD	BBBAALBBB
H	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	50.0	H3	10	H3-10-2	15	ARHFYTYFDV	BBBBEABBAB
H	heavy	Cricetulus.migratorius	Ra_IGHV2-19*01	90.4	Ra_IGHV2-19*01	100.0	H4	8	H4-8-1	14	RDTSKSQV	BBAAALBB
L	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	CDRLenMismatch	-1.0	L1	11	L1-11-4	24	SGDKLSDVYVH	BBABAAABBBB
L	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	Ra_IGKV8S6*01	37.5	L2	8	L2-8-1	21	YEDNRRPS	BLEBBBBB
L	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	Ra_IGKV8S6*01	14.3	L3	11	L3-11-*	-1	QSWDGTNSAWV	BBBBAABBBBB
L	lambda	Cricetulus.migratorius	Ra_IGKV8S6*01	59.7	Ra_IGKV8S6*01	33.3	L4	6	L4-6-2	21	NSGNMA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022