PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3MCK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	93.8	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLE	BBABBABBABABBBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	10	YKVSNRFS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	11	FQGSRVPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	100.0	H1	15	H1-15-*	-1	SFSGFSLSTSGMgvS	BBBLBBABBLLBBBB
B	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	100.0	H2	9	H2-9-1	11	HIYWDDDKR	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	33.3	H3	15	H3-15-*	-1	TRSSGSiVIATGFAY
B	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	100.0	H4	8	H4-8-1	9	KDTSRNQV	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	100.0	H1	15	H1-15-*	-1	SFSGFSLSTSGMgvS	BBBLBBABBBLBBBB
H	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	100.0	H2	9	H2-9-1	14	HIYWDDDKR	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	33.3	H3	15	H3-15-*	-1	TRSSGSiVIATGFAY
H	heavy	Mus.musculus	Mo_IGHV8-12*01	97.3	Mo_IGHV8-12*01	100.0	H4	8	H4-8-1	9	KDTSRNQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	93.8	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLE	BBABBABBABABBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	9	YKVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	10	FQGSRVPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	92.8	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022