PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3L7F

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV16-104*01	100.0	L1	11	L1-11-1	5	RASKSISKYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV16-104*01	100.0	L2	8	L2-8-1	7	YSGSTLQS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	10	QQHNEYPYT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	10	TVSGFSLSTYGMgvG	BBBLBBAABBLBBBB
B	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Mo_IGHV8-8*01	77.8	H2	9	H2-9-1	10	HIWWDDVKR	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Hu_IGHV2-26*03	66.7	H3	13	H3-13-2	29	ARMGSDYDVWFDY	BBBABAABBBBAB
B	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Hu_IGHV2-26*03	100.0	H4	8	H4-8-1	11	KDTSKSQV	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV16-104*01	100.0	L1	11	L1-11-1	9	RASKSISKYLA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV16-104*01	100.0	L2	8	L2-8-1	7	YSGSTLQS	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	10	QQHNEYPYT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	12	TVSGFSLSTYGMgvG	BBBLBBAABBLBBBB
E	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Mo_IGHV8-8*01	77.8	H2	9	H2-9-1	11	HIWWDDVKR	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Hu_IGHV2-26*03	66.7	H3	13	H3-13-2	28	ARMGSDYDVWFDY	BBBABAABBBBAB
E	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Hu_IGHV2-26*03	100.0	H4	8	H4-8-1	10	KDTSKSQV	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Mo_IGHV8-8*01	80.0	H1	15	H1-15-1	10	TVSGFSLSTYGMgvG	BBBLBBAABBLBBBB
H	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Mo_IGHV8-8*01	77.8	H2	9	H2-9-1	9	HIWWDDVKR	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Hu_IGHV2-26*03	66.7	H3	13	H3-13-2	29	ARMGSDYDVWFDY	BBBABAABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV2-26*03	95.9	Hu_IGHV2-26*03	100.0	H4	8	H4-8-1	10	KDTSKSQV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV16-104*01	100.0	L1	11	L1-11-1	8	RASKSISKYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV16-104*01	100.0	L2	8	L2-8-1	12	YSGSTLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	13	QQHNEYPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022