PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3KYM

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	18	RASQSVSSYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	9	YDASNRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	13	QQYDKWPLT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	15	AASGFTFSIYPMF	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-2	19	WIGPSGGITK	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	AEBBBABBBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	14	RASQSVSSYLA	BBAEBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	16	YDASNRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	9	QQYDKWPLT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	14	GSGTEF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSIYPMF	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-2	15	WIGPSGGITK	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	BBBAEaBBBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	15	RASQSVSSYLA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	10	YDASNRAT	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	9	QQYDKWPLT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	9	GSGTEF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	18	AASGFTFSIYPMF	BBBLEBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-2	13	WIGPSGGITK	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	BBBBBABBEBAB
F	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	23	RDNSKNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	11	RASQSVSSYLA	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	9	YDASNRAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	14	QQYDKWPLT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	11	GSGTEF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	12	AASGFTFSIYPMF	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-*	-1	WIGPSGGITK	BBBAALAAEB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	BBBBBLbLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	11	RDNSKNTL	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	15	RASQSVSSYLA	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	15	YDASNRAT	BLEABBBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	17	QQYDKWPLT	BBBABBbBB
I	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	12	GSGTEF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	11	AASGFTFSIYPMF	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-*	-1	WIGPSGGITK	BBBBLELBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	BBBBBLBABBAB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	15	RDNSKNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	12	RASQSVSSYLA	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	10	YDASNRAT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	7	QQYDKWPLT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB
L	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	20	AASGFTFSIYPMF	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-*	-1	WIGPSGGITK	BBBAALABBA
L	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	AEBBABeLBBAB
L	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-1	18	RASQSVSSYLA	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-1	11	YDASNRAT	BLEABBBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-1	14	QQYDKWPLT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-1	19	GSGTEF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	16	AASGFTFSIYPMF	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-*	-1	WIGPSGGITK	BBBBEBABBB
N	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	BBBAEAlBBBAB
N	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	14	RDNSKNTL	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	90.9	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBBAABB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	75.0	L2	8	L2-8-*	-1	YDASNRAT	AEEBBBBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	71.4	L3	9	L3-9-cis7-*	-1	QQYDKWPLT	AEBBABbBB
O	kappa	Homo.sapiens	Hu_IGKV3-15*01	94.2	Hu_IGKV3-15*01	100.0	L4	6	L4-6-*	-1	GSGTEF	EEEABB
P	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	H1	13	H1-13-1	16	AASGFTFSIYPMF	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H2	10	H2-10-*	-1	WIGPSGGITK	BBBBEALlLB
P	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50.0	H3	12	H3-12-*	-1	AREGHNDWYFDL	AEBBLLBBBBAB
P	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB

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