PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3KJ4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	18	KSSQSLlnsrnrKNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	24	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	83.3	L3	8	L3-8-1	11	MQSYNLFT	BBAABEBB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	84.6	H1	13	H1-13-1	17	SVSGFSLSSYGVH	BBBLEBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	66.7	H2	9	H2-9-*	-1	VIWSGGNTH	BBBABABBB
C	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	100.0	H3	14	H3-14-*	-1	ARvgiyYEGAWFAY
C	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	75.0	H4	8	H4-8-1	9	KENSKNQV	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	84.6	H1	13	H1-13-1	18	SVSGFSLSSYGVH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	66.7	H2	9	H2-9-*	-1	VIWSGGNTH	BBBABABBB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	100.0	H3	14	H3-14-*	-1	ARVGIYYEGAWFAY	BBLlEEBBEEBLAB
H	heavy	Mus.musculus	Mo_IGHV2-9*02	91.8	Mo_IGHV2-9*02	75.0	H4	8	H4-8-1	12	KENSKNQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	94.1	L1	17	L1-17-*	-1	KSSQSLlnsrnrKNYLA	BBABBABBABLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	12	YWASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	83.3	L3	8	L3-8-1	13	MQSYNLFT	BBAABEBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022