PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3KDM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	100.0	L1	14	L1-14-2	7	TGTSSDVGgYNYVS	BBBAAAAAABABBB
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	75.0	L2	8	L2-8-1	13	YGVTNRPS	BLLABBBB
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	66.7	L3	11	L3-11-*	-1	SSYTSTRTPYV	BBBBABABABB
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	12	KSGNTA	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H2	10	H2-10-2	22	AISGSGGSTY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	50.0	H3	15	H3-15-*	-1	ARDPGLwDYYYGMDV
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	23	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	12	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H2	10	H2-10-2	7	AISGSGGSTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	50.0	H3	15	H3-15-*	-1	ARDPGLwDYYYGMDV
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	98.6	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	12	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	100.0	L1	14	L1-14-2	7	TGTSSDVGgYNYVS	BBBAABAAABABBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	75.0	L2	8	L2-8-1	10	YGVTNRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	66.7	L3	11	L3-11-*	-1	SSYTSTRTPYV	BBBBABABABB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	98.5	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	13	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022