PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3JUY

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	12	QASGYRFSHFTVH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	10	WINPYNGNKE	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgewgwDDSPYDNYYMDV
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	7	ADTSANTA	BBAAALBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	5	HGVSNRAS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	57.1	L3	9	L3-9-3	20	QVYGASSYT	BBBBAABBB
A	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	12	QASGYRFSHFTVH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	8	WINPYNGNKE	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgewgwDDSPYDNYYMDV
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	10	ADTSANTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	7	HGVSNRAS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	57.1	L3	9	L3-9-3	17	QVYGASSYT	BBBBAABBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	11	QASGYRFSHFTVH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	8	WINPYNGNKE	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgewgwDDSPYDNYYMDV
C	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	8	ADTSANTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	9	HGVSNRAS	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	57.1	L3	9	L3-9-3	20	QVYGASSYT	BBBBAABBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	11	QASGYRFSHFTVH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	8	WINPYNGNKE	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgewgwDDSPYDNYYMDV
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	10	ADTSANTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	22	HGVSNRAS	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	57.1	L3	9	L3-9-*	-1	QVYGASSYT	BBBBAABBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	12	QASGYRFSHFTVH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	8	WINPYNGNKE	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgewgwDDSPYDNYYMDV
E	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	8	ADTSANTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	8	HGVSNRAS	BLEABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	57.1	L3	9	L3-9-*	-1	QVYGASSYT	BBBBAABBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	11	QASGYRFSHFTVH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	10	WINPYNGNKE	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgewgwDDSPYDNYYMDV
F	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	10	ADTSANTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	17	HGVSNRAS	BLEABBBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	57.1	L3	9	L3-9-*	-1	QVYGASSYT	BBBEAABBB
F	kappa	Homo.sapiens	Hu_IGKV3-20*01	88.4	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	10	GSGTDF	EEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022