PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3JCX

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Rattus.norvegicus	Ra_IGHV2-32*01	94.0	Ra_IGHV2-32*01	92.3	H1	13	H1-13-*	-1	TVSGFSLSSYHVH	bLAEBBALbBBbA
H	heavy	Rattus.norvegicus	Ra_IGHV2-32*01	94.0	Ra_IGHV2-32*01	88.9	H2	9	H2-9-*	-1	VMWNDGDTS	BBEABBbBA
H	heavy	Rattus.norvegicus	Ra_IGHV2-32*01	94.0	Ra_IGHV2-32*01	100.0	H3	16	H3-16-*	-1	ARPELpgLTYGVWFPY
H	heavy	Rattus.norvegicus	Ra_IGHV2-32*01	94.0	Ra_IGHV2-32*01	100.0	H4	8	H4-8-*	-1	RDTSKSQV	bBBBBaba
L	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	95.5	Ra_IGKV6S10*01	90.9	L1	11	L1-11-*	-1	KASQNVDSNVD	BBABBAEBABB
L	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	95.5	Ra_IGKV6S10*01	87.5	L2	8	L2-8-*	-1	YKASNRNT	BBBbBABL
L	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	95.5	Ra_IGKV6S10*01	85.7	L3	9	L3-9-cis7-*	-1	MQSTSYPLT	BBBABBbBB
L	kappa	Rattus.norvegicus	Ra_IGKV6S10*01	95.5	Ra_IGKV6S10*01	100.0	L4	6	L4-6-1	25	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022