PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3JBQ

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	Mo_IGHV14-4*02	92.3	H1	13	H1-13-1	20	TASGFNIKDYYIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	CDRLenMismatch	-1.0	H2	9	H2-9-1	16	WIDEIGDTE	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	Mo_IGHV14-4*02	100.0	H3	13	H3-13-*	-1	NAGHDYDRgrfPY
H	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	Mo_IGHV14-4*02	100.0	H4	8	H4-8-1	18	ADTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L1	11	L1-11-1	21	KASQNVGTAVA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L2	8	L2-8-1	16	YSASNRYT	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L3	9	L3-9-cis7-1	11	QQYSSYPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L4	6	L4-6-1	25	GSGTDF	EBEABB
h	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	Mo_IGHV14-4*02	92.3	H1	13	H1-13-*	-1	TASGFNIKDYYIH	BBBLBBAAABBBB
h	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	CDRLenMismatch	-1.0	H2	9	H2-9-1	20	WIDEIGDTE	BBBAALBBB
h	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	Mo_IGHV14-4*02	100.0	H3	13	H3-13-*	-1	NAGHDYDRgrfPY
h	heavy	Mus.musculus	Mo_IGHV14-4*02	95.9	Mo_IGHV14-4*02	100.0	H4	8	H4-8-1	19	ADTSSNTA	BBAAALBB
l	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L1	11	L1-11-1	21	KASQNVGTAVA	BBABBAEABBB
l	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L2	8	L2-8-1	15	YSASNRYT	BLLABBBB
l	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L3	9	L3-9-cis7-1	11	QQYSSYPLT	BBAABBbBB
l	kappa	Mus.musculus	Mo_IGKV6-13*01	98.6	Mo_IGKV6-13*01	100.0	L4	6	L4-6-1	25	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022