PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J8Z

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H1	13	H1-13-1	9	KASGYTFTSYWMQ	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	8	AIYPGDGYTR	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARTYAGYYVGYFDY	BBBBBEABBBBBAB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H1	13	H1-13-1	9	KASGYTFTSYWMQ	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	8	AIYPGDGYTR	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARTYAGYYVGYFDY	BBBBBEABBBBBAB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H1	13	H1-13-1	9	KASGYTFTSYWMQ	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	8	AIYPGDGYTR	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARTYAGYYVGYFDY	BBBBBEABBBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H1	13	H1-13-1	9	KASGYTFTSYWMQ	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	8	AIYPGDGYTR	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARTYAGYYVGYFDY	BBBBBEABBBBBAB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	94.0	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	82.4	L1	17	L1-17-1	9	KSSQSLfdsrnqKNYLA	BBABBABBAAALBBBBB
J	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L2	8	L2-8-1	5	YFASTRES	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-2	11	QQHYSTPYT	BBABEBbBB
J	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
K	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	82.4	L1	17	L1-17-1	9	KSSQSLfdsrnqKNYLA	BBABBABBAAALBBBBB
K	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L2	8	L2-8-1	5	YFASTRES	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-2	11	QQHYSTPYT	BBABEBbBB
K	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	82.4	L1	17	L1-17-1	9	KSSQSLfdsrnqKNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L2	8	L2-8-1	5	YFASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-2	11	QQHYSTPYT	BBABEBbBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	82.4	L1	17	L1-17-1	9	KSSQSLfdsrnqKNYLA	BBABBABBAAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L2	8	L2-8-1	5	YFASTRES	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-2	11	QQHYSTPYT	BBABEBbBB
M	kappa	Mus.musculus	Mo_IGKV8-24*01	97.1	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022