PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J8W

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	10	KASGYTFISYWMQ	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	12	AIYPGDGATR	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPSYYDYdVTWFAY
F	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	10	KASGYTFISYWMQ	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	12	AIYPGDGATR	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPSYYDYdVTWFAY
G	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	10	KASGYTFISYWMQ	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	12	AIYPGDGATR	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPSYYDYdVTWFAY
H	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	10	KASGYTFISYWMQ	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	12	AIYPGDGATR	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPSYYDYdVTWFAY
I	heavy	Mus.musculus	Mo_IGHV1-87*01	97.1	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L1	11	L1-11-1	6	RASENIYSYLA	BBABBAEABBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	8	YNAETLAE	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	71.4	L3	9	L3-9-cis7-1	11	QHHYVSPLT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	16	GSGTQF	EBEABB
K	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L1	11	L1-11-1	6	RASENIYSYLA	BBABBAEABBB
K	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	8	YNAETLAE	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	71.4	L3	9	L3-9-cis7-1	11	QHHYVSPLT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	16	GSGTQF	EBEABB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L1	11	L1-11-1	6	RASENIYSYLA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	8	YNAETLAE	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	71.4	L3	9	L3-9-cis7-1	11	QHHYVSPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	16	GSGTQF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L1	11	L1-11-1	6	RASENIYSYLA	BBABBAEABBB
M	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	8	YNAETLAE	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	71.4	L3	9	L3-9-cis7-1	11	QHHYVSPLT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV12-44*01	95.7	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	16	GSGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022