PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J8D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence
A	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	CDRLenMismatch	-1.0	L1	11	L1-11-*	-1	RASESVDSFIY
A	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L2	8	L2-8-*	-1	YLASNLES
A	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L3	9	L3-9-*	-1	QQNNEDPYT
A	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	83.3	L4	6	L4-6-*	-1	GSETDF
A	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	84.6	H1	13	H1-13-*	-1	KASGYTFTNWWMH
A	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	70.0	H2	10	H2-10-*	-1	RIDPNSDVNK
A	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	0.0	H3	11	H3-11-*	-1	ARWFFPWYFDV
A	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	87.5	H4	8	H4-8-*	-1	VDKHSSTA
D	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	84.6	H1	13	H1-13-*	-1	KASGYTFTNWWMH
D	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	70.0	H2	10	H2-10-*	-1	RIDPNSDVNK
D	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	0.0	H3	11	H3-11-*	-1	ARWFFPWYFDV
D	heavy	Mus.musculus	Mo_IGHV1-72*03	83.6	Mo_IGHV1-72*03	87.5	H4	8	H4-8-*	-1	VDKHSSTA
D	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	CDRLenMismatch	-1.0	L1	11	L1-11-*	-1	RASESVDSFIY
D	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L2	8	L2-8-*	-1	YLASNLES
D	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L3	9	L3-9-*	-1	QQNNEDPYT
D	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	83.3	L4	6	L4-6-*	-1	GSETDF

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022