PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J7E

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	88.2	L1	17	L1-17-*	-1	KSSQSLldsrnqKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L2	8	L2-8-4	12	YFASTRES	BEAABBBB
A	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-1	12	QQHYSTPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	7	KASGYTFASYWMQ	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	9	AIYPGDGDTW	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPPYYyGTTYYFDY
B	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	88.2	L1	17	L1-17-*	-1	KSSQSLldsrnqKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L2	8	L2-8-4	12	YFASTRES	BEAABBBB
C	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-1	12	QQHYSTPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	7	KASGYTFASYWMQ	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	9	AIYPGDGDTW	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPPYYyGTTYYFDY
D	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	88.2	L1	17	L1-17-*	-1	KSSQSLldsrnqKNYLA	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L2	8	L2-8-4	12	YFASTRES	BEAABBBB
E	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-1	12	QQHYSTPLT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	7	KASGYTFASYWMQ	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	9	AIYPGDGDTW	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPPYYyGTTYYFDY
F	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	92.3	H1	13	H1-13-1	7	KASGYTFASYWMQ	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	90.0	H2	10	H2-10-1	9	AIYPGDGDTW	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	15	H3-15-*	-1	ARPPYYyGTTYYFDY
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	88.2	L1	17	L1-17-*	-1	KSSQSLldsrnqKNYLA	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L2	8	L2-8-4	12	YFASTRES	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L3	9	L3-9-cis7-1	12	QQHYSTPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV8-24*01	100.0	Mo_IGKV8-24*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022