PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J42

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	8	AASGFTFSSFGMH	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	80.0	H2	10	H2-10-2	12	YISSGSSTLH	BBBAALABBB
G	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H3	13	H3-13-*	-1	ARWGNYPHYAMDY	BBBBLBaBBBBAB
G	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	6	RDNPKNTL	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L1	11	L1-11-*	-1	KASENVGTYVS	BBABBBBlABB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L2	8	L2-8-4	16	YGASNRYT	BEAABBBB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	85.7	L3	9	L3-9-cis7-1	11	GQSYSTPYT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L4	6	L4-6-1	9	GSATDF	EBEABB
I	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	8	AASGFTFSSFGMH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	80.0	H2	10	H2-10-2	12	YISSGSSTLH	BBBAALABBB
I	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H3	13	H3-13-*	-1	ARWGNYPHYAMDY	BBBBLBaBBBBAB
I	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	6	RDNPKNTL	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L1	11	L1-11-*	-1	KASENVGTYVS	BBABBBBlABB
J	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L2	8	L2-8-4	16	YGASNRYT	BEAABBBB
J	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	85.7	L3	9	L3-9-cis7-1	11	GQSYSTPYT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L4	6	L4-6-1	9	GSATDF	EBEABB
K	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	8	AASGFTFSSFGMH	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	80.0	H2	10	H2-10-2	12	YISSGSSTLH	BBBAALABBB
K	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H3	13	H3-13-*	-1	ARWGNYPHYAMDY	BBBBLBaBBBBAB
K	heavy	Mus.musculus	Mo_IGHV5-17*02	100.0	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	6	RDNPKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L1	11	L1-11-*	-1	KASENVGTYVS	BBABBBBlABB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L2	8	L2-8-4	16	YGASNRYT	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	85.7	L3	9	L3-9-cis7-1	11	GQSYSTPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV6-20*01	98.6	Mo_IGKV6-20*01	100.0	L4	6	L4-6-1	9	GSATDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022