PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J2Z

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	90.0	L1	10	L1-10-1	11	SASSSVTYMY	BBABBBABBB
A	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L2	8	L2-8-1	13	YDTSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	50.0	L3	9	L3-9-cis7-*	-1	QQRTNYPLT	BBBLALblB
A	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	92.3	H1	13	H1-13-1	12	KASGYTFTSKWMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H2	10	H2-10-*	-1	NIDPSDSETH	BBBBAlBBBB
B	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H3	11	H3-11-*	-1	ARGVTRGYFDV	BBBBEBbBBAB
B	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BBBAllBB
C	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	90.0	L1	10	L1-10-1	11	SASSSVTYMY	BBABBBABBB
C	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L2	8	L2-8-1	13	YDTSNLAS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	50.0	L3	9	L3-9-cis7-*	-1	QQRTNYPLT	BBBLALblB
C	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	92.3	H1	13	H1-13-1	12	KASGYTFTSKWMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H2	10	H2-10-*	-1	NIDPSDSETH	BBBBAlBBBB
D	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H3	11	H3-11-*	-1	ARGVTRGYFDV	BBBBEBbBBAB
D	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BBBAllBB
E	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	90.0	L1	10	L1-10-1	11	SASSSVTYMY	BBABBBABBB
E	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L2	8	L2-8-1	13	YDTSNLAS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	50.0	L3	9	L3-9-cis7-*	-1	QQRTNYPLT	BBBLALblB
E	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	92.3	H1	13	H1-13-1	12	KASGYTFTSKWMH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H2	10	H2-10-*	-1	NIDPSDSETH	BBBBAlBBBB
F	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H3	11	H3-11-*	-1	ARGVTRGYFDV	BBBBEBbBBAB
F	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BBBAllBB
G	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	90.0	L1	10	L1-10-1	11	SASSSVTYMY	BBABBBABBB
G	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L2	8	L2-8-1	13	YDTSNLAS	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	50.0	L3	9	L3-9-cis7-*	-1	QQRTNYPLT	BBBLALblB
G	kappa	Mus.musculus	Mo_IGKV4-55*01	100.0	Mo_IGKV4-55*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	92.3	H1	13	H1-13-1	12	KASGYTFTSKWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H2	10	H2-10-*	-1	NIDPSDSETH	BBBBAlBBBB
H	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H3	11	H3-11-*	-1	ARGVTRGYFDV	BBBBEBbBBAB
H	heavy	Mus.musculus	Mo_IGHV1-52*01	100.0	Mo_IGHV1-52*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BBBAllBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022