PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3J1S

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV3-1*02	95.8	Mo_IGHV3-1*02	92.9	H1	14	H1-14-*	-1	TVTGYSITSgYTWH	BBBLBBABLEEBBB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	95.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	6	YIHFSGYTN	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	95.8	Mo_IGHV3-1*02	100.0	H3	12	H3-12-*	-1	ARGDYGYEWFTY	BBBBBEABBBAB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	95.8	Mo_IGHV3-1*02	100.0	H4	8	H4-8-1	11	RDTSKNQF	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV13-84*01	97.1	Mo_IGKV13-84*01	90.9	L1	11	L1-11-2	12	KASEDIHNRLA	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV13-84*01	97.1	Mo_IGKV13-84*01	100.0	L2	8	L2-8-1	8	SGATSLET	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV13-84*01	97.1	Mo_IGKV13-84*01	71.4	L3	9	L3-9-cis7-1	5	QQYWIGPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV13-84*01	97.1	Mo_IGKV13-84*01	100.0	L4	6	L4-6-1	16	GSGKDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022