PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3IXX

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence
G	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	92.3	H1	13	H1-13-*	-1	ATSGFTFTDYYMT
G	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	83.3	H2	12	H2-12-*	-1	FIGNKanDYTTE
G	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	33.3	H3	12	H3-12-*	-1	ATVYGNYPYFDV
G	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	87.5	H4	8	H4-8-*	-1	RDDSQSIL
H	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	100.0	L1	10	L1-10-*	-1	SASSSVSYMH
H	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	75.0	L2	8	L2-8-*	-1	YESSKLAS
H	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	75.0	L3	11	L3-11-*	-1	QQWSSHphpLT
H	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	100.0	L4	6	L4-6-*	-1	GSGTSY
I	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	92.3	H1	13	H1-13-*	-1	ATSGFTFTDYYMT
I	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	83.3	H2	12	H2-12-*	-1	FIGNKanDYTTE
I	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	33.3	H3	12	H3-12-*	-1	ATVYGNYPYFDV
I	heavy	Mus.musculus	Mo_IGHV7-3*02	94.5	Mo_IGHV7-3*02	87.5	H4	8	H4-8-*	-1	RDDSQSIL
J	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	100.0	L1	10	L1-10-*	-1	SASSSVSYMH
J	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	75.0	L2	8	L2-8-*	-1	YESSKLAS
J	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	75.0	L3	11	L3-11-*	-1	QQWSSHphpLT
J	kappa	Mus.musculus	Mo_IGKV4-59*01	95.7	Mo_IGKV4-59*01	100.0	L4	6	L4-6-*	-1	GSGTSY

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022