PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3IJS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L1	17	L1-17-1	9	KSSQSLlnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	5	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	83.3	L3	8	L3-8-1	7	KQSNNLRT	BBAABEBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	100.0	H1	13	H1-13-1	13	ATSGFTFTDYYMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	7	FIRNKakGYTTE	BBBBAAALLBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	100.0	H3	17	H3-17-*	-1	ARDispSYGVYYEGFAY
B	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	12	RDNSQSIL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L1	17	L1-17-1	9	KSSQSLlnsrtrKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	83.3	L3	8	L3-8-1	8	KQSNNLRT	BBAABEBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	100.0	H1	13	H1-13-1	8	ATSGFTFTDYYMS	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	7	FIRNKakGYTTE	BBBBAAALLBBB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	100.0	H3	17	H3-17-*	-1	ARDispSYGVYYEGFAY
D	heavy	Mus.musculus	Mo_IGHV7-3*02	97.3	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	13	RDNSQSIL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022