PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3IFP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	93.3	H1	15	H1-15-1	12	SFSGFSLSTNGMgvS	BBBLBBAABBLBBBB
A	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	88.9	H2	9	H2-9-1	14	HIYWDEDKR	BBBAALBBB
A	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	100.0	H3	15	H3-15-*	-1	ARRRIiYDVEDYFDY
A	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	87.5	H4	8	H4-8-1	16	KDTSNNQV	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	13	RSSQNIvhsngNTYLE	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPLT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	93.3	H1	15	H1-15-1	12	SFSGFSLSTNGMgvS	BBBLBBAABBLBBBB
C	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	88.9	H2	9	H2-9-1	14	HIYWDEDKR	BBBAALBBB
C	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	100.0	H3	15	H3-15-*	-1	ARRRIiYDVEDYFDY
C	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	87.5	H4	8	H4-8-1	16	KDTSNNQV	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	13	RSSQNIvhsngNTYLE	BBABBABBAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPLT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	93.3	H1	15	H1-15-1	12	SFSGFSLSTNGMgvS	BBBLBBAABBLBBBB
E	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	88.9	H2	9	H2-9-1	14	HIYWDEDKR	BBBAALBBB
E	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	100.0	H3	15	H3-15-*	-1	ARRRIiYDVEDYFDY
E	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	87.5	H4	8	H4-8-1	16	KDTSNNQV	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	13	RSSQNIvhsngNTYLE	BBABBABBAALBBBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPLT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	93.3	H1	15	H1-15-1	12	SFSGFSLSTNGMgvS	BBBLBBAABBLBBBB
H	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	88.9	H2	9	H2-9-1	14	HIYWDEDKR	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	100.0	H3	15	H3-15-*	-1	ARRRIiYDVEDYFDY
H	heavy	Mus.musculus	Mo_IGHV8-12*01	95.9	Mo_IGHV8-12*01	87.5	H4	8	H4-8-1	16	KDTSNNQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	13	RSSQNIvhsngNTYLE	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022