PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3IF1

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	6	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L3	8	L3-8-3	9	SQSTHVPT	BBAABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	91.7	H2	12	H2-12-1	13	EIRNKanNHETY	BBBBAAALLBBB
B	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	0.0	H3	9	H3-9-*	-1	SGGKVRNAY	BEEABBLAB
B	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	11	RDDSKSRM	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	7	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L3	8	L3-8-3	6	SQSTHVPT	BBAABBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	11	AASGFTFSDAWMD	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	91.7	H2	12	H2-12-1	12	EIRNKanNHETY	BBBBAAALLBBB
D	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	0.0	H3	9	H3-9-*	-1	SGGKVRNAY	BEEABBLAB
D	heavy	Mus.musculus	Mo_IGHV6-6*01	86.3	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	9	RDDSKSRM	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022