PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3HFM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV3S1*01	95.8	Mo_IGHV3S1*01	92.3	H1	13	H1-13-*	-1	SVTGDSITSDYWS	BBBEBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	95.8	Mo_IGHV3S1*01	88.9	H2	9	H2-9-*	-1	YVSYSGSTY	BBBBELBBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	95.8	Mo_IGHV3S1*01	50.0	H3	7	H3-7-*	-1	ANWDGDY	BBEALAB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	95.8	Mo_IGHV3S1*01	100.0	H4	8	H4-8-1	18	RDTSKNQY	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	90.9	L1	11	L1-11-*	-1	RASQSIGNNLH	BBBEALBLBBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L2	8	L2-8-4	29	KYASQSIS	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	11	QQSNSWPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	98.6	Mo_IGKV5-43*01	100.0	L4	6	L4-6-1	25	GSGTDF	EEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022