PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3HAE

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	11	TGTSRDVGgYNYVS	BBBAAAAAABABBB
G	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	62.5	L2	8	L2-8-1	14	HDVIIRPS	BLEABBBB
G	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	25	WSFAGSYYV	BBBAEAEBB
G	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	16	KSGNTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	15	AASGFTFSAYGMG	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-*	-1	SIGSSGGGTA	BBBEeBEEbB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-*	-1	AASGFTFSAYGMG	BBBEBBAABEBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-*	-1	SIGSSGGGTA	BBBBLLBBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
I	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	17	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	13	TGTSRDVGgYNYVS	BBBAAAAAABBBBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	62.5	L2	8	L2-8-1	14	HDVIIRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	21	WSFAGSYYV	EBBAEABBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	10	KSGNTA	BBEABB
N	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	12	TGTSRDVGgYNYVS	BBBAAAAAABABBB
N	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	62.5	L2	8	L2-8-1	4	HDVIIRPS	BLLABBBB
N	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	23	WSFAGSYYV	BBBAEABBB
N	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	11	KSGNTA	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-*	-1	AASGFTFSAYGMG	BBBLEBAAABBBE
O	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-*	-1	SIGSSGGGTA	BBBAAEEBBB
O	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
O	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	13	RDNSKNTL	BBAAALBB
S	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	14	TGTSRDVGgYNYVS	BBBAABAAABABBB
S	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	62.5	L2	8	L2-8-1	19	HDVIIRPS	BLLABBBB
S	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	25	WSFAGSYYV	BBBAEABBB
S	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	12	KSGNTA	BBEABB
T	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	76.9	H1	13	H1-13-1	16	AASGFTFSAYGMG	BBBLBBAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H2	10	H2-10-*	-1	SIGSSGGGTA	BBBABEEABB
T	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
T	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	19	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022