PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3H3B

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	84.6	H1	13	H1-13-1	10	KASGYSFTGYFIN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	30.0	H2	10	H2-10-1	15	HISSSYATST	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	50.0	H3	13	H3-13-*	-1	VRSGNYEEYAMDY	BBBBBEAAABBAB
C	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	87.5	H4	8	H4-8-1	7	VDTSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	88.2	L1	17	L1-17-1	6	KSSQTLlysnnqKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	62.5	L2	8	L2-8-1	9	SWAFTRKS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	4	QQYSNYPWT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	84.6	H1	13	H1-13-1	13	KASGYSFTGYFIN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	30.0	H2	10	H2-10-1	13	HISSSYATST	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	50.0	H3	13	H3-13-*	-1	VRSGNYEEYAMDY	BBBBBEAAABBAB
D	heavy	Mus.musculus	Mo_IGHV1-42*01	82.2	Mo_IGHV1-42*01	87.5	H4	8	H4-8-1	7	VDTSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	88.2	L1	17	L1-17-1	5	KSSQTLlysnnqKNYLA	BBABBABBAAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	62.5	L2	8	L2-8-1	10	SWAFTRKS	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	5	QQYSNYPWT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022