PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3GJF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	84.6	H1	13	H1-13-1	10	AASGFTFSTYQMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	60.0	H2	10	H2-10-*	-1	GIVSSGGSTA	BBBAAEEBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
K	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	8	TGTSRDVGgYNYVS	BBBAAAAAABABBB
K	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	50.0	L2	8	L2-8-1	6	HDVIERSS	BLEABBBB
K	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	19	WSFAGSYYV	BBBAEABBB
K	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	12	KSGNTA	BBEABB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	8	TGTSRDVGgYNYVS	BBBAAAAAABABBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	50.0	L2	8	L2-8-1	6	HDVIERSS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	19	WSFAGSYYV	BBBAEABBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	10	KSGNTA	BBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	84.6	H1	13	H1-13-1	10	AASGFTFSTYQMS	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	60.0	H2	10	H2-10-*	-1	GIVSSGGSTA	BBBAAEEBBB
M	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
M	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022