PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3GJE

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	14	TGTSRDVGgYNYVS	BBBAAAAAAEABBB
A	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	50.0	L2	8	L2-8-1	6	HDVIERSS	BLEABBBB
A	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	20	WSFAGSYYV	BBBAEABBB
A	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	13	KSGNTA	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	84.6	H1	13	H1-13-1	11	AASGFTFSTYQMS	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	60.0	H2	10	H2-10-*	-1	GIVSSGGSTA	BBBAAEEBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
B	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	14	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	84.6	H1	13	H1-13-1	12	AASGFTFSTYQMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	60.0	H2	10	H2-10-*	-1	GIVSSGGSTA	BBBAAEEBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	50.0	H3	12	H3-12-*	-1	AGELLPYYGMDV	BBBABBLAEBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*05	100.0	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	18	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	92.9	L1	14	L1-14-2	13	TGTSRDVGgYNYVS	BBBAAAAAABABBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	50.0	L2	8	L2-8-1	6	HDVIERSS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	55.6	L3	9	L3-9-4	20	WSFAGSYYV	BBBAEABBB
L	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	11	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022