PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3GBM

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	84.6	H1	13	H1-13-*	-1	KASGGPFRSYAIS	BBBEEaBBABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	80.0	H2	10	H2-10-3	13	GIIPIFGTTK	BBBBEALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	50.0	H3	14	H3-14-*	-1	AKHMGYQVRETMDV	BBBABABBBABBAB
H	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	37.5	H4	8	H4-8-1	8	ADDFAGTV	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	84.6	H1	13	H1-13-*	-1	KASGGPFRSYAIS	BBBEEaBBABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	80.0	H2	10	H2-10-3	14	GIIPIFGTTK	BBBBEALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	50.0	H3	14	H3-14-*	-1	AKHMGYQVRETMDV	BBBABABBBABBAB
I	heavy	Homo.sapiens	Hu_IGHV1-69*06	86.3	Hu_IGHV1-69*06	37.5	H4	8	H4-8-1	10	ADDFAGTV	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	92.3	L1	13	L1-13-1	22	SGSSSNIGNDYVS	BBBAAAAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	18	YDNNKRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	44.4	L3	12	L3-12-*	-1	ATWDRrpTaYVV
L	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L4	6	L4-6-*	-1	KSGTSA	BAEABB
M	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	92.3	L1	13	L1-13-1	23	SGSSSNIGNDYVS	BBBAAAAAABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L2	8	L2-8-1	17	YDNNKRPS	BLLABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	44.4	L3	12	L3-12-*	-1	ATWDRrpTaYVV
M	lambda	Homo.sapiens	Hu_IGLV1-51*01	98.5	Hu_IGLV1-51*01	100.0	L4	6	L4-6-2	25	KSGTSA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022