PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3G6J

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	90.9	L1	11	L1-11-1	9	RASQDVSTAVA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	28.6	L3	9	L3-9-*	-1	QQSYATLPT	BBABEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Mo_IGHV1-31*01	46.2	H1	13	H1-13-1	18	AASGFSFTSSSVS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Mo_IGHV1-31*01	60.0	H2	10	H2-10-1	15	LIYPYNGFNY	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Hu_IGHV3-66*01	100.0	H3	16	H3-16-*	-1	ARNALYgsGGYYAMDY
F	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Hu_IGHV3-66*01	50.0	H4	8	H4-8-1	12	ANTSKNTA	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	90.9	L1	11	L1-11-1	8	RASQDVSTAVA	BBABBAEAABB
G	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	6	YSASFLYS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	28.6	L3	9	L3-9-2	14	QQSYATLPT	BBAABABBB
G	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Mo_IGHV1-31*01	46.2	H1	13	H1-13-1	16	AASGFSFTSSSVS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Mo_IGHV1-31*01	60.0	H2	10	H2-10-1	11	LIYPYNGFNY	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Hu_IGHV3-66*01	100.0	H3	16	H3-16-*	-1	ARNALYgsGGYYAMDY
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	93.2	Hu_IGHV3-66*01	50.0	H4	8	H4-8-1	8	ANTSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022