PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3FKU

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
S	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	61.5	H1	13	H1-13-*	-1	TSSEVTFSSFAIS	BBABABAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	70.0	H2	10	H2-10-1	13	GISPMFGTPN	BBBAAALBBB
S	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	100.0	H3	17	H3-17-*	-1	ARSPSYICsggTCVFDH
S	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	75.0	H4	8	H4-8-1	20	ADQSTRTA	BBAAALBB
S	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L1	13	L1-13-*	-1	TGNSNNVGNQGAA	BBBAAAAAAAEBB
S	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	87.5	L2	8	L2-8-*	-1	YRNNDRPS	BAALBBBA
S	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	88.9	L3	11	L3-11-1	17	STWDSSLSAVV	BBBBAAALBBB
S	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L4	6	L4-6-2	27	RSGNTA	BAEABB
T	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	61.5	H1	13	H1-13-*	-1	TSSEVTFSSFAIS	BBABABAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	70.0	H2	10	H2-10-1	16	GISPMFGTPN	BBBAAALBBB
T	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	100.0	H3	17	H3-17-*	-1	ARSPSYICsggTCVFDH
T	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	75.0	H4	8	H4-8-*	-1	ADQSTRTA	BBAABBBB
T	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L1	13	L1-13-*	-1	TGNSNNVGNQGAA	BBBAAAAAAAEBB
T	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	87.5	L2	8	L2-8-*	-1	YRNNDRPS	BAALBBBA
T	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	88.9	L3	11	L3-11-1	16	STWDSSLSAVV	BBBBAAALBBB
T	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L4	6	L4-6-2	18	RSGNTA	BBEABB
U	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	61.5	H1	13	H1-13-*	-1	TSSEVTFSSFAIS	BBABABAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	70.0	H2	10	H2-10-1	17	GISPMFGTPN	BBBAAALBBB
U	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	100.0	H3	17	H3-17-*	-1	ARSPSYICsggTCVFDH
U	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	75.0	H4	8	H4-8-1	19	ADQSTRTA	BBAAALBB
U	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L1	13	L1-13-*	-1	TGNSNNVGNQGAA	BBBAAAAAAAEBB
U	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	87.5	L2	8	L2-8-*	-1	YRNNDRPS	BAALBBBA
U	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	88.9	L3	11	L3-11-1	13	STWDSSLSAVV	BBBBAAALBBB
U	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L4	6	L4-6-2	22	RSGNTA	BBEABB
X	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	61.5	H1	13	H1-13-*	-1	TSSEVTFSSFAIS	BBABABAAABBBB
X	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	70.0	H2	10	H2-10-*	-1	GISPMFGTPN	EBBAAAEBBB
X	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	100.0	H3	17	H3-17-*	-1	ARSPSYICsggTCVFDH
X	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	75.0	H4	8	H4-8-1	13	ADQSTRTA	BBAAALBB
X	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L1	13	L1-13-*	-1	TGNSNNVGNQGAA	BBBAAAAAAAEBB
X	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	87.5	L2	8	L2-8-*	-1	YRNNDRPS	BAALBBBA
X	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	88.9	L3	11	L3-11-1	12	STWDSSLSAVV	BBBBAAALBBB
X	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L4	6	L4-6-2	22	RSGNTA	BBEABB
Y	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	61.5	H1	13	H1-13-*	-1	TSSEVTFSSFAIS	BBABABAAABBBB
Y	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	70.0	H2	10	H2-10-1	13	GISPMFGTPN	BBBAAALBBB
Y	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	100.0	H3	17	H3-17-*	-1	ARSPSYICsggTCVFDH
Y	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	75.0	H4	8	H4-8-*	-1	ADQSTRTA	BBAABBBB
Y	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L1	13	L1-13-*	-1	TGNSNNVGNQGAA	BBBAAAAAAAEBB
Y	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	87.5	L2	8	L2-8-*	-1	YRNNDRPS	BAALBBBA
Y	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	88.9	L3	11	L3-11-1	12	STWDSSLSAVV	BBBBAAALBBB
Y	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L4	6	L4-6-2	9	RSGNTA	BBEABB
Z	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	61.5	H1	13	H1-13-*	-1	TSSEVTFSSFAIS	BBABAAAAABBBB
Z	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	70.0	H2	10	H2-10-1	12	GISPMFGTPN	BBBAAALBBB
Z	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	100.0	H3	17	H3-17-*	-1	ARSPSYICsggTCVFDH
Z	heavy	Homo.sapiens	Hu_IGHV1-69*06	93.2	Hu_IGHV1-69*06	75.0	H4	8	H4-8-1	16	ADQSTRTA	BBAAALBB
Z	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L1	13	L1-13-*	-1	TGNSNNVGNQGAA	BBBAABAAAAEBB
Z	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	87.5	L2	8	L2-8-*	-1	YRNNDRPS	BAALBBBA
Z	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	88.9	L3	11	L3-11-1	12	STWDSSLSAVV	BBBBAAALBBB
Z	lambda	Homo.sapiens	Hu_IGLV10-54*01	98.5	Hu_IGLV10-54*01	100.0	L4	6	L4-6-2	9	RSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022