PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3EOB

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV16-104*01	90.9	L1	11	L1-11-1	14	RASKTISKYLA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV16-104*01	100.0	L2	8	L2-8-1	13	YSGSTLQS	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	42.9	L3	9	L3-9-cis7-1	14	QQHNEYPLT	BBBABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Mo_IGHV1S82*01	76.9	H1	13	H1-13-1	11	AASGYSFTGHWMN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Mo_IGHV1S82*01	100.0	H2	10	H2-10-1	15	MIHPSDSETR	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Hu_IGHV3-66*01	100.0	H3	14	H3-14-*	-1	ARGIYFYGTTYFDY	BBBBAABEABBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	13	VDKSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Mo_IGHV1S82*01	76.9	H1	13	H1-13-1	10	AASGYSFTGHWMN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Mo_IGHV1S82*01	100.0	H2	10	H2-10-1	16	MIHPSDSETR	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Hu_IGHV3-66*01	100.0	H3	14	H3-14-*	-1	ARGIYFYGTTYFDY	BBBBAABEABBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	89.0	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	12	VDKSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV16-104*01	90.9	L1	11	L1-11-1	19	RASKTISKYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Mo_IGKV16-104*01	100.0	L2	8	L2-8-1	10	YSGSTLQS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	42.9	L3	9	L3-9-cis7-1	17	QQHNEYPLT	BBBABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-6*01	100.0	Hu_IGKV1-6*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022