PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3EO1

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	83.3	L1	12	L1-12-*	-1	RASQSLgSSYLA	BBABBBBABABB
A	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-*	-1	YGASSRAP	BEBLBBBB
A	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	9	L3-9-cis7-1	13	QQYADSPIT	BBAABBbBB
A	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	76.9	H1	13	H1-13-*	-1	KASGYTFSSNVIS	BBBEAAAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	70.0	H2	10	H2-10-3	17	GVIPIVDIAN	BBBBEALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	50.0	H3	13	H3-13-*	-1	ASTLGLVLDAMDY	BBBAABABBBBAB
B	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	75.0	H4	8	H4-8-1	14	ADESTSTT	BBAAALBB
D	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	83.3	L1	12	L1-12-*	-1	RASQSLgSSYLA	BBABBAEBLABB
D	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-*	-1	YGASSRAP	BEELBBBB
D	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	9	L3-9-cis7-1	17	QQYADSPIT	BBAABBbBB
D	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	22	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	76.9	H1	13	H1-13-*	-1	KASGYTFSSNVIS	BBBEABAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	70.0	H2	10	H2-10-3	20	GVIPIVDIAN	BBBBLALBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	50.0	H3	13	H3-13-*	-1	ASTLGLVLDAMDY	BBBAEBABBBBAB
E	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	75.0	H4	8	H4-8-1	18	ADESTSTT	BBAAALBB
G	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	83.3	L1	12	L1-12-*	-1	RASQSLgSSYLA	BBABBBBABABB
G	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-*	-1	YGASSRAP	BEBLBBBB
G	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	9	L3-9-cis7-1	13	QQYADSPIT	BBAABBbBB
G	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	76.9	H1	13	H1-13-*	-1	KASGYTFSSNVIS	BBBEAAAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	70.0	H2	10	H2-10-3	17	GVIPIVDIAN	BBBBEALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	50.0	H3	13	H3-13-*	-1	ASTLGLVLDAMDY	BBBAABABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	75.0	H4	8	H4-8-1	14	ADESTSTT	BBAAALBB
J	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	83.3	L1	12	L1-12-*	-1	RASQSLgSSYLA	BBABBAEBLABB
J	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-*	-1	YGASSRAP	BEELBBBB
J	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	71.4	L3	9	L3-9-cis7-1	17	QQYADSPIT	BBAABBbBB
J	kappa	Mus.musculus	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	22	GSGTDF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	76.9	H1	13	H1-13-*	-1	KASGYTFSSNVIS	BBBEABAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	70.0	H2	10	H2-10-3	20	GVIPIVDIAN	BBBBLALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	50.0	H3	13	H3-13-*	-1	ASTLGLVLDAMDY	BBBAEBABBBBAB
K	heavy	Homo.sapiens	Hu_IGHV1-69*17	94.5	Hu_IGHV1-69*17	75.0	H4	8	H4-8-1	18	ADESTSTT	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022