PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3DVN

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RASQSVSSAVA	AABBAEBABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	11	YSASSLYS	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	11	L3-11-1	23	QQYSSYSslFT	BBBBAAALBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	10	RSGTDF	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV14-1*01	53.8	H1	13	H1-13-1	18	AASGFNVKTGLIH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV14-1*01	40.0	H2	10	H2-10-1	10	YISPYYGSTS	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	13	H3-13-*	-1	AREYYRWYTAIDY	BBBBAAALLBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	10	ADTSKNTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV14-1*01	53.8	H1	13	H1-13-1	18	AASGFNVKTGLIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV14-1*01	40.0	H2	10	H2-10-1	10	YISPYYGSTS	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	13	H3-13-*	-1	AREYYRWYTAIDY	BBBBAAALLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RASQSVSSAVA	AAALBABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	7	YSASSLYS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	11	L3-11-*	-1	QQYSSYSslFT	BBBBAABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	13	RSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022