PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3DUU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	76.5	L1	17	L1-17-1	15	KSSQSLfksrnqKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	10	KQSYNLRT	BBAABEBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	100.0	H1	13	H1-13-1	14	ATSGFTFTDYYMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	83.3	H2	12	H2-12-1	14	FIRNKakGYTVE	BBBBAAALLBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	100.0	H3	12	H3-12-*	-1	ARDGYYVDAMDY	BBBEAAALBBAB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	8	RDNSQSIL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	76.5	L1	17	L1-17-1	15	KSSQSLfksrnqKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	11	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	9	KQSYNLRT	BBAABEBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	92.8	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	100.0	H1	13	H1-13-1	13	ATSGFTFTDYYMS	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	83.3	H2	12	H2-12-1	11	FIRNKakGYTVE	BBBBAAALLBBB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	100.0	H3	12	H3-12-*	-1	ARDGYYVDAMDY	BBBEAAALBBAB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	100.0	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	11	RDNSQSIL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022